| INCA_-_INteractive_Codon_Analysis Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further |
| JAligner Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment. |
| JSTRING Java program for searching Tandem Repeats (TR) in a DNA sequence. It shows the results also in a graphical format. |
| Keck_Computational_Systems_Biology_Software Software for simulating metabolic, signal and genetic networks. Home of Jarnac, JDesigner and SCAMP. |
| limmaGUI A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes. |
| MAFFT Multiple sequence alignment program for linux and other unix-like operating systems. Offers a range of multiple alignment strategies. |
| MaGe_(Magnifying_Genomes)_-_Microbial_genome_Annotation_System The MaGe system offers a set of graphical interfaces which allow biologist to perform relevant expert annotation of microbial genomes. |
| Mauve Free software for constructing global alignments of multiple rearranged genomes. The visualization environment displays sequence similarity profiles and annotated sequence features. |
| MedScan Commercial Windows natural language processing software for the automated extraction of biological data from scientific literature. |
| MELTING Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions. |
| Meta-MEME Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the Univ. of California-San Diego. |
| MIRA A sequence assembly suite with SNP detection for "hard" projects. |
| msa_cgb_ki_se Open source software developed by Timo Lassmann for multiple sequence alignment, including Kalign, Kalignvu and Mumsa. |
| Nano+Bio-Centre Offers a range of free software tools for annotating an entire genome, assembling sequences, gap closing and analysis of microarrays. |
| NCBI_BLAST BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA. |
| pDRAW32 Freeware DNA cloning, analysis and visualization software. |
| Phrap/Consed DNA sequence assembler and finishing tools from the UW Genome Center. |
| PHRED A widely-used program for base calling DNA sequencing trace files. Source code available and free for non-commecial users. |
| Premier_Biosoft_International Developers of software for real time PCR primer design, TaqMan, molecular beacons, SYBR green, FRET, DNA microarray analysis, restriction cloning, plasmid maps, gateway cloning, protein interaction |
| RGBG_Analyzer Commercial software to analyses the red, green, blue, and gray color values of user-selected areas of images in gif, tiff, bmp, jpeg format. Windows 2000 & XP. |
| Seqtools Commercial Windows software for batch handling and analysis of nucleotide and protein sequences. |
| Sequence_Analysis A freeware Java application that does many standard types of DNA and protein sequence analysis tasks. |
| SeWeR An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application. |
| Sfold Predicts probable RNA secondary structures, assesses target accessibility, and provides tools for the rational design of RNA-targeting nucleic acids. The web server version is free for academic use. |
| Sockeye 3D visualisation platform for Comparative Genomics visualisation. |
| STRAP Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation. |
| STRING Search for Tandem Repeats IN Genomes. Includes C source code and examples. |
| Tandem_Repeats_Finder Locates and displays tandem repeats in DNA sequences. |
| WU-BLAST The Washington University improved version of BLAST. Free for academic users. |
| XDigitize A Linux/Unix visualization software system for evaluation of hybridisation experiments. |
| Applied_Computational_Electromagnetics_Society ACES provides a forum for issues relevant to numerical modeling in applied electromagnetics. |
| Basic_Electronics Online book which covers topics from ohms law to digital circuits. Contains interactive troubleshooting simulations. |
| CdTe_Gamma_Detectors_Equipped_With_Ohmic_Contacts Gamma induced currents in CdTe and CdZnTe semiconductor detectors equipped with ohmic contacts are not sensitive to hole trapping. |
| CEDRAT Provides a fully integrated line of tools, products and services in electrical engineering. |
| Differential_Forms_in_Electromagnetic_Theory The differential forms research group at BYU is investigating the use of the calculus of differential forms in teaching and research. Differential forms have been used to express Maxwell's laws sinc |
| Electricity_and_Magnetism An excerpt of a set of online course notes focusing on electricity and magnetism. |
| Electricity_from_Lightning Site addresses the power of lightning, and the question of how to harness that power, whether there are substantial reasons not to. |
| Electrodynamics_in_Relativistic_Notation Describes Lorentz scalars, covariant and contravariant vectors and tensors, and how to use relativistic notation to describe charge conservation and the inhomogenous wave equation for potentials. |
| The_Electromagnetic_Field_Tensor A page of notes on advanced methods of electromagnetism |
| Electromagnetic_Induction A virtual experiment on creating electric current with a changing magnetic field. |
. . An integrated linux environment forbioinformatics and evolutionary analysis based on the GeneticData Environment (GDE). 
DownloadGDE for Linux DownloadGDE for Mac OS X Documentation BioinformaticsSoftware integrated with GDE for Linux. PAUP and Linux- Menu-Driven Interface for GDEand PAUP scripts for phylogenetic analysis. Organism specific interfaces formicrobial and parasite sequence analysis The BioAfrica web site is maintained by: Dr. TuliodeOliveira, Revised 10th of November2005- Copyright @ BioAfrica. 